
Crossing mushroom genetics is a complex process that involves creating hybrid strains through controlled breeding. Mushrooms exhibit genetic variability within populations, resulting in diverse traits and characteristics. By understanding mushroom genetics, cultivators can select and crossbreed strains with desirable traits such as fast colonization time, strong immunity, and sturdy fruiting bodies. This process involves obtaining spores or tissue cultures from compatible parental strains, inoculating growth media, and facilitating mating to produce new genetic combinations. Techniques like protoplast fusion, genome shuffling, and chemical mutagenesis are also employed to modify phenotypic traits and enhance bioefficiency, nutritional value, and valuable metabolites. The ultimate goal is to develop superior mushroom strains with improved characteristics for cultivation and consumption.
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What You'll Learn

Choose compatible strains with desirable traits
When choosing compatible mushroom strains with desirable traits to cross, there are several factors to consider. Firstly, it is important to understand the genetic compatibility between strains. Mushrooms typically have two mating types, designated as "plus" (+) and "minus" (-). Successful mating and sexual reproduction require compatible mating types. Genetic similarities between strains are also necessary for successful mating and hybridization.
Secondly, the specific traits you are aiming to enhance or combine will guide your strain selection. For example, oyster mushrooms (Pleurotus ostreatus) can be crossed with different varieties within the same species to produce hybrids with unique flavours, textures, and growth characteristics. Shiitake mushrooms are often crossed to enhance their flavour profiles, improve yields, and increase resistance to environmental stressors. Similarly, compatible strains of lion's mane mushrooms can be crossed to enhance their medicinal properties, increase the size of their fruiting bodies, and improve their texture.
Additionally, wild strains can be a valuable resource for introducing desirable traits, especially disease resistance. For instance, wild tetrasporic A. bisporus var. burnettii exhibits heightened resistance to the pathogen causing bacterial blotch (Pseudomonas tolaasii). By crossing wild strains with cultivated varieties, you can incorporate these desirable traits into your hybrids.
Lastly, consider the specific breeding techniques and tools available to achieve your desired outcomes. Traditional breeding methods include the antagonism test, isoenzyme electrophoresis, clamp connection, fluorescent staining, and drug resistance markers. More advanced techniques, such as genome editing tools like CRISPR/Cas 9, can modify undesirable trait expressions and introduce desirable genes. These tools enable you to enhance or suppress specific traits, providing more precise control over the characteristics of your hybrids.
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Collect spores or tissue cultures
Collecting spores or tissue cultures is the first step in crossing mushroom genetics. It involves obtaining spores or tissue samples from selected parental mushroom strains with desirable traits. Here is a detailed guide on how to collect spores or tissue cultures:
Collecting Spores:
Spores are microscopic particles that carry the genetic material of fungi. They are like the seeds of the mushroom world and can be collected from mature mushroom fruiting bodies. Here is a step-by-step guide to collecting spores:
- Choose a mature mushroom: Select a mushroom that is ready to release its spores. Look for a firm cap that is not wet or mushy, and ensure the gills are moist as dry gills may not release spores.
- Sterilize your tools: Use sterile water, either boiled or pressure-cooked at 15 psi for 15 minutes. Sterilize any tools that will come into contact with the mushroom, such as scissors or knives, by dipping them into the sterile water or holding them over a flame.
- Prepare the mushroom: Remove the stem from the mushroom, leaving only the cap. Place the cap gill-side down onto a sterile surface, such as aluminium foil or a microscope slide. Alternatively, you can place the cap gill-side down directly onto a piece of paper.
- Add water: Place a drop or two of water onto the mushroom cap. This helps to moisten the gills and encourage spore release.
- Cover the mushroom: Use a cup, bowl, or container to cover the mushroom. This prevents the spores from blowing away and ensures they are collected onto the surface. Make sure the container does not press on the top of the mushroom, as this may damage it.
- Wait: Leave the covered mushroom alone for 2 to 24 hours. Mushrooms typically start releasing spores within a few hours, and the longer you leave it, the more spores you will collect.
- Reveal the spores: After the waiting period, remove the container and lift the mushroom to see the spore print on the surface underneath. The spores will resemble dirt or dust and can vary in colour, including brown, black, white, red, and yellow shades.
- Collect the spores: If you used paper, carefully detach the paper from the surface and store it in a dry place. If you used a microscope slide or aluminium foil, use a knife or similar tool to scrape the spores off the surface and into a sterile container for storage.
Collecting Tissue Cultures:
Tissue cultures can be obtained from actively growing mycelium, which is the vegetative part of the mushroom. Here is an overview of the process:
- Obtain a sample: Start with a small section of healthy, actively growing mycelium. This can be taken from a pure culture or directly from a mushroom fruit body.
- Prepare the sample: The tissue sample should be free of contamination and properly sterilized to prevent any unwanted growth or impurities.
- Inoculate a growth medium: Place the tissue sample onto an agar plate or another suitable growth medium. Agar, a gel-like substance derived from seaweed, is commonly used as a solid growth medium for fungi.
- Incubate and monitor: Provide the necessary environmental conditions, such as appropriate temperature and humidity, for fungal growth. Regularly check for signs of colonization and contamination to ensure the culture's purity.
- Expand the culture: Once the initial tissue culture is established, you can transfer small sections of the mycelium to new agar plates or growth media to expand your culture and maintain its viability.
By collecting spores or tissue cultures, you gain access to the genetic material of mushrooms and can begin the process of crossing different strains to create unique hybrids with enhanced traits. Remember to practice good sterile technique and take precautions to avoid potential hazards, such as misidentification of species and spore inhalation.
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Prepare growth medium
When preparing to cross mushroom genetics, the first step is to select the fungus organisms to be crossbred. The two organisms should be from the same species but different strains. Once you have selected the two parent fungi, you can prepare the growth medium.
The growth medium provides a shared environment for the two fungi to replicate and exchange genetic material. It should be nutrient-rich to support the growth of the fungi and can be in the form of a solid substrate or liquid culture. Common growth media include agar, gellan gum, liquid culture solution, and grain. The size and shape of the growth medium can vary depending on the specific application and can be supported within a standard Petri dish.
If you are using agar as your growth medium, it is important to sterilize the substrate and work in sterile, lab-like conditions to prevent contamination. Agar is ideal for storing mushroom strains and tissue cloning. Grain, on the other hand, is used for rapid mycelial expansion and is typically the step after agar medium. It is too nutrient-rich for bulk substrate fruiting but can be supplemented with a sawdust or wood pellet base to boost yields. Grain also requires treatment with pressurized steam and inoculation in lab conditions.
Other nutrient formulas can be used to make Petri plates that are high in nutrients and conducive to mycelium growth. However, these plates are highly susceptible to contamination and are therefore only used in small quantities.
By providing a suitable growth medium, you will enable the two fungus organisms to replicate, form colonies, and eventually intersect and exchange genetic material, resulting in a crossbred fungus organism.
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Incubate and monitor cultures
Incubating and monitoring cultures is a crucial step in crossing mushroom genetics. It involves creating an environment conducive to fungal growth and carefully observing the process to ensure success and avoid contamination. Here's a detailed guide:
Incubation Setup
Start by obtaining spores or tissue cultures from the selected parental strains. Spores can be collected from mature mushroom fruiting bodies, while tissue cultures can be obtained from actively growing mycelium. Use a sterile scalpel or razor blade to take a small piece of tissue, no larger than a grain of rice, and place it on a sterile agar Petri dish. Alternatively, you can use spores and inoculate them onto an agar plate or other suitable growth medium. Ensure that the medium provides essential nutrients to support fungal growth.
Environmental Conditions
Maintain the appropriate temperature and humidity levels for the specific species of mushroom you are working with. Different mushrooms have different optimal conditions, so it's important to research and replicate the ideal environment for your chosen species. This step is crucial, as temperature and humidity play a significant role in fungal growth.
Monitoring for Colonization
Regularly monitor the cultures for signs of colonization and contamination. This step requires patience and careful observation. Keep detailed records of your experiments and observations. Look for indications of fungal growth, such as the formation of new mycelium on the agar plate. This new mycelium will eventually form a new colony, which is a clone of the parent mushroom.
Preventing Contamination
Practice strict sterile techniques throughout the process to minimize the risk of contamination. Contamination can occur from competing organisms, so maintaining a sterile environment is essential to ensure the success of your cross-breeding experiment. Select parental strains with strong immunity towards competing organisms, as this trait can be passed on to their hybrids, making them more resistant to contamination.
Long-Term Monitoring
Once you've established healthy colonies, continue to monitor them over time. Cross-breeding mushrooms can be a time-consuming process, and you may need to repeat the crossing and selection process multiple times to arrive at a strain with all the desired characteristics. Maintain detailed records of each step to track the progress of your experiments and make informed decisions.
By carefully incubating and monitoring your mushroom cultures, you can create the optimal conditions for successful cross-breeding, leading to the development of new and enhanced mushroom strains with unique characteristics.
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Clone the new strain
Cloning a mushroom strain involves taking a small piece of mycelium and growing it on an agar petri dish. This small piece of mycelium can be taken from another colonized agar petri dish or from a mushroom fruiting body.
Agar is a gelatinous substance that is derived from algae and is commonly used in microbiology to grow microorganisms. The mycelium is placed on the agar, and over time, it will grow and form a new colony. To clone a mushroom strain, you will need to start with a mushroom mycelia that is healthy and free from contamination. Once you have selected your mushroom mycelia, you will need to clean the surface with alcohol to sterilize it.
Using a sterile scalpel or razor blade, carefully remove a small piece of tissue from either your petri dish or from the stem or cap of the mushroom. The tissue should be no larger than a grain of rice. It's best to use a fresh, healthy mushroom fruiting body. Although younger mushrooms may colonize faster, try to select a relatively large fruiting body. It's more difficult to get clean tissue samples from very small or thin-fleshed mushrooms.
You can continue to "clone" your desired strain this way and even put it in the refrigerator for long-term storage. If you want to have a backup of this strain, you can let the mycelium develop into fruits, and collect the spores in a spore print. The spore print will have a mixing of the genetics, but it will be mixed within the same mycelial colony, instead of with an outside colony. This way, you can preserve the genetics in a more stable spore form that, although is not an exact copy, will share similar properties as the parent clone.
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Frequently asked questions
Mushrooms are haploid organisms, meaning they possess a single set of chromosomes. They typically have two mating types, designated as "plus" and "minus" (e.g. + and -). Compatible mating types can mate and undergo sexual reproduction.
You can try combining spores from two mushroom species on an agar plate and letting them grow together. Alternatively, you can mix spores in sterile water and use a micropipette to drop them onto an agar plate.
Modern techniques for crossing mushroom genetics include protoplast fusion, genome shuffling, and gene (genome) editing. Protoplast fusion involves merging haploid cells to generate a diploid zygote, which can then undergo meiosis to produce spores with new genetic information.
Desirable traits to look for when crossing mushroom genetics include fast colonization time, strong immunity towards competing organisms, sturdy fruiting bodies, vigour, yield, flavour, and resistance to disease.

























