
Sour rot, also known as wet spot or wet rot, is a common type of bacterial contamination in mushroom cultivation. It is mainly caused by Bacillus species, specifically Bacillus subtilis and Bacillus cereus, which are known for their ability to survive extreme conditions due to their endospore-forming capabilities. This allows them to withstand high temperatures during sterilisation, remaining dormant and only becoming active once conditions are favourable for their growth. Sour rot can spread quickly and is characterised by dull grey or brownish slime with a sour smell, giving it its name. It is important to identify and isolate contaminated areas early to prevent the spread of sour rot, which can negatively impact mushroom growth and yield.
| Characteristics | Values |
|---|---|
| Common name | Wet Spot |
| Other names | Sour Rot, Wet Rot |
| Cause | Bacillus bacteria |
| Appearance | Dull grey slime, discoloured patches, excessive moisture |
| Smell | Sour, foul, fermented, rotten, ammonia |
| Affected areas | Bottom of jars/bags, uncolonised patches |
| Preventative measures | Use high-quality, uncontaminated substrate, regular inspection, proper sterilisation techniques, soak grains before sterilisation |
| Treatment | Identify and isolate affected areas, seal and dispose of contaminated cultures, sanitise area |
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What You'll Learn

Sour rot is a bacterial contamination
Sour rot, also known as wet spot or wet rot, is a bacterial contamination in mushroom cultivation. It is characterised by dull grey or brownish slime with a sour-smelling odour, giving it its name. The affected areas look excessively wet, and the substrate may feel slimy to the touch. Sour rot is mainly caused by Bacillus species, specifically Bacillus subtilis and Bacillus cereus, which are known for their ability to survive extreme conditions. The bacteria form heat-resistant endospores that can remain dormant and withstand high temperatures during sterilisation. If the substrate is not exposed to sufficient heat and pressure for an extended period, these endospores can survive and later germinate, leading to sour rot contamination.
To prevent sour rot, it is crucial to start with high-quality, uncontaminated substrates sourced from reputable suppliers. Regularly inspecting substrates for signs of contamination, such as discolouration, unusual odours, or signs of bacterial growth, is essential. If contamination is suspected, early identification and isolation of the affected areas are critical to prevent the spread of bacteria. Soaking grains for 12 to 24 hours before sterilisation can help activate and eliminate the bacteria and their endospores.
Once sour rot is identified, the contaminated substrate should be carefully sealed in a plastic bag and disposed of immediately to prevent the spread of spores. A thorough cleaning and sanitisation of the affected area are necessary to eliminate any remaining contaminants. It is also important to identify the source of the contamination, which could include external factors such as discarded coffee grounds, compost, or damp, untreated wood.
Sour rot can have a significant impact on mushroom cultivation. It not only affects the appearance and quality of the mushrooms but also leads to foul odours and a reduction in yield. Early detection and proper preventive measures are crucial to minimise the spread and impact of sour rot contamination in mushroom cultivation.
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It is also known as 'wet spot' or 'wet rot'
Sour rot, also known as wet spot or wet rot, is a common bacterial contamination in mushroom cultivation. It is characterised by dull grey slime with a sour-smelling odour and excessive moisture, giving it the appearance of being excessively wet. It is caused by bacteria from the genus Bacillus, specifically Bacillus subtilis and Bacillus cereus, which are known for their ability to survive in extreme conditions due to their endospore-forming capabilities. These bacteria can withstand high temperatures during the sterilisation process, remaining dormant and surviving sterilisation. Once the substrate cools down, the bacteria can become active again and cause contamination.
The primary cause of wet spot contamination is the use of a contaminated substrate. Substrates can become contaminated during the preparation phase if they are not handled properly or if they come into contact with bacteria from external sources. Grains and other organic materials used as substrates can harbour Bacillus spores, which can survive the sterilisation process if not properly managed. Improper sterilisation techniques, such as insufficient heat and pressure, can also contribute to wet spot contamination.
To prevent wet spot contamination, it is crucial to source substrates from reliable suppliers and handle them in a clean environment. Maintaining high standards of hygiene during the cultivation process is essential, including regular cleaning and sterilisation of equipment and workspaces, as well as the use of protective gear. Additionally, grains should be soaked for 12 to 24 hours before sterilisation to allow any bacterial endospores to germinate and be killed during the sterilisation process.
Identifying wet spot contamination early is crucial for successful mushroom cultivation. Visual signs include discoloured patches, typically dull grey or brownish, with a slimy texture. The affected areas often have excessive moisture and produce a distinctive sour or foul odour as the bacteria multiply. Once identified, it is important to isolate the contaminated sections to minimise the risk of spreading the bacteria to healthy parts of the substrate.
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Sour rot is caused by Bacillus bacteria
Sour rot is a common issue in mushroom cultivation, and it is primarily caused by bacteria from the genus Bacillus, specifically Bacillus subtilis and Bacillus cereus. This bacterial contamination can have detrimental effects on the appearance, quality, and yield of mushroom crops.
Bacillus bacteria are known for their remarkable ability to survive in extreme conditions, including high temperatures during sterilisation processes. This resilience is attributed to their endospore-forming capabilities. Endospores are highly resistant to heat and other unfavourable conditions, allowing the bacteria to remain dormant and survive sterilisation if not adequately managed.
In the context of mushroom cultivation, Bacillus spores can be present in grains and other organic materials used as substrates. If these substrates are not properly sterilised, the endospores can persist and later germinate, leading to sour rot contamination. This contamination manifests as slimy, discoloured patches on the substrate, giving rise to the term "wet spot."
To prevent and control sour rot caused by Bacillus bacteria in mushroom cultivation, several measures can be implemented. Firstly, it is essential to source high-quality, uncontaminated substrates from reliable suppliers. Regular inspection of the substrates before use is crucial to identify any signs of contamination, such as unusual odours, discolouration, or signs of bacterial growth. Proper sterilisation techniques, such as using a pressure cooker or autoclave correctly, are vital to ensure the substrates reach and maintain the necessary temperature and pressure to kill potential contaminants.
Additionally, it is important to act quickly once contamination is identified. Contaminated cultures should be sealed and disposed of immediately to prevent the spread of spores. Thorough sanitation of the affected area is also necessary to minimise the risk of further contamination.
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It is characterised by discoloured, slimy patches
Sour rot, also known as "wet spot", is a common bacterial contamination in mushroom cultivation. It is characterised by discoloured, slimy patches. These patches can be dull grey or brownish in colour, and the affected areas often look excessively wet compared to the surrounding substrate. This is how the contamination gets its name, "wet spot".
The discolouration is caused by bacterial growth, specifically from the genus Bacillus, namely Bacillus subtilis and Bacillus cereus. These bacteria are known for their ability to survive in extreme conditions due to their endospore-forming capabilities, allowing them to withstand high temperatures during sterilisation. As a result, they can remain dormant and survive the sterilisation process, only to become active again once conditions are favourable, leading to contamination.
The discoloured, slimy patches are a telltale sign of sour rot. These patches may also feel sticky or wet to the touch. While discolouration alone may not always indicate spoilage, especially in the case of bruising or ageing, it is important to look for other signs such as sliminess or a foul odour. If the bacterial growth is left unchecked, it can lead to a significant reduction in yield and affect the quality of the mushroom crop.
To prevent and control sour rot, it is crucial to start with high-quality, uncontaminated substrates sourced from reliable suppliers. Regular inspections of materials before use can help identify any signs of contamination, such as discolouration, odour, or bacterial growth. If contamination is suspected, the affected areas should be isolated to minimise the risk of spreading. Proper sterilisation techniques, such as using a pressure cooker or autoclave, are essential to eliminate potential contaminants before inoculation with mushroom mycelium.
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It has a distinctive sour smell
Sour rot, also known as wet spot, is a common bacterial contamination in mushroom cultivation. It is characterised by a distinctive sour smell, dull grey slime, and excessive moisture. The bacteria responsible for sour rot, primarily Bacillus subtilis and Bacillus cereus, are known for their ability to survive extreme conditions due to their endospore-forming capabilities. These endospores can remain dormant and withstand high temperatures during sterilisation, only to become active and cause contamination once conditions become favourable for their growth.
The sour smell is a telltale sign of bacterial contamination. The affected substrate may also exhibit slimy, discoloured patches, typically dull grey or brownish, and appear excessively wet compared to the surrounding area. This moisture contributes to the "wet spot" moniker. The distinctive sour odour, combined with these visual cues, are key indicators of sour rot contamination.
To prevent sour rot, it is essential to start with high-quality, uncontaminated substrates sourced from reputable suppliers. Regular inspections of materials for any unusual odours, discolouration, or signs of bacterial growth are crucial. Early detection is vital to mitigate the impact of sour rot and prevent the spread of bacteria to healthy parts of the substrate. Once identified, contaminated sections should be isolated and separated from non-contaminated areas to minimise the risk of further spreading.
Proper sterilisation techniques are critical to eliminating potential contaminants in the substrate before inoculation with mushroom mycelium. However, improper sterilisation can contribute to sour rot contamination. To effectively kill all potential contaminants, it is important to ensure that the substrate is exposed to sufficient heat and pressure for an appropriate duration. Correct use of a pressure cooker or autoclave is recommended to achieve the necessary temperature and pressure conditions.
Additionally, soaking grains for an extended period before sterilisation can help address bacterial contamination. Soaking grains for 12 to 24 hours at room temperature activates the heat-resistant endospores, making them susceptible to standard sterilisation processes. This practice is particularly effective against Bacillus spp., the primary cause of sour rot. By addressing the underlying sources of contamination and implementing preventive measures, mushroom cultivators can effectively minimise the occurrence and spread of sour rot in their crops.
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Frequently asked questions
Sour rot, also known as wet spot or wet rot, is a common bacterial contamination in mushroom cultivation. It is mainly caused by bacteria from the genus Bacillus, specifically Bacillus subtilis and Bacillus cereus.
Sour rot spreads through bacterial contamination on grains, which are characterised by a dull grey slime and a sour smell. The bacteria can remain dormant and survive the sterilisation process, only to cause contamination once the substrate cools down and conditions become favourable for their growth.
Sour rot typically appears as dull grey or brownish patches on the substrate. These patches can have a slimy texture, indicating bacterial growth. The affected areas often look excessively wet compared to the surrounding substrate.
To prevent sour rot, it is important to start with high-quality, uncontaminated substrates sourced from reputable suppliers. Regularly inspect your substrates for any unusual odours, discolouration, or signs of mould or bacterial growth. Soaking grains for 12 to 24 hours before sterilisation can also help activate and kill bacteria and their endospores.
If you find sour rot, it is important to act quickly to prevent it from spreading. Identify and isolate the affected areas, then dispose of the contaminated cultures by sealing them in a plastic bag. Afterwards, thoroughly sanitise the affected area and inspect your workspace for potential sources of contamination.

























